cluster2pattern-methods: Generic cluster2pattern function

In genesofeve/ProjectR: Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Generic cluster2pattern function

Description

Function to make patterns of continuous weights from clusters.

Usage

cluster2pattern(clusters, NP, data, ...)

## S4 method for signature 'character'
cluster2pattern(clusters, data)

## S4 method for signature 'numeric'
cluster2pattern(clusters, data)

## S4 method for signature 'kmeans'
cluster2pattern(clusters, data)

## S4 method for signature 'hclust'
cluster2pattern(clusters, NP, data = NA)

Arguments

clusters	a cluster object which could be either an hclust or a kmeans object
NP	number of desired patterns
data	data used to make clusters object
...	Additional arguments to cluster2pattern

Value

An object of class pclust containing pattern weights corresponding for each cluster.

Examples

k.RNAseq6l3c3t<-kmeans(t(p.RNAseq6l3c3t),3)
cluster2pattern(clusters=k.RNAseq6l3c3t,data=p.RNAseq6l3c3t)

distp <- dist(t(p.RNAseq6l3c3t))
hc.RNAseq6l3c3t <- hclust(distp)
cluster2pattern(clusters=hc.RNAseq6l3c3t,NP=3,data=p.RNAseq6l3c3t)

genesofeve/ProjectR documentation built on Nov. 16, 2024, 8:20 p.m.