Man pages for genexplain/geneXplainR
An R interface for the geneXplain platform
| gx.analysis | Execute analysis using one of the integrated tools |
| gx.analysis.list | Lists available analysis tools |
| gx.analysis.parameters | Shows parameters for the specified analysis tool |
| gx.classifyChipSeqTargets | Runs the workflow _ChIP-Seq - Identify and classify target... |
| gx.createFolder | Create a folder |
| gx.createProject | Create a new project |
| gx.delete | Delete a workspace item |
| gx.ebarraysWorkflow | Runs the workflow _Compute differentially expressed genes... |
| gx.enrichedTFBSGenes | Runs the workflow _Identify enriched motifs in promoters... |
| gx.enrichedUpstreamAnalysis | Runs the workflow _Enriched upstream analysis (TRANSFAC(R)... |
| gx.exists | Finds out if a function exists |
| gx.explainMyGenes | Runs the workflow _Explain my genes_ |
| gx.export | Exports item using specified exporter |
| gx.exporters | Lists available exporters |
| gx.export.parameters | Returns parameters defined for given export and path to... |
| gx.focusedUpstreamAnalysis | Runs the workflow _Focused upstream analysis (TRANSFAC(R) and... |
| gx.get | Gets a table from the platform workspace |
| gx.import | Imports a file into the platform |
| gx.importBedFile | Import a BED file |
| gx.importers | Lists available importers |
| gx.import.parameters | Returns parameters defined for given importer and path to... |
| gx.importTable | Import a table from a text file |
| gx.isElement | Finds out if an item is part of a folder |
| gx.job.info | Gets status info for a job running on the platform |
| gx.limmaWorkflow | Runs the workflow _Compute differentially expressed genes... |
| gx.login | Signs into geneXplain platform |
| gx.logout | Terminates an existing platform session |
| gx.ls | List contents of platform folder |
| gx.mapGenesToOntologies | Runs the workflow _Mapping to ontologies (Gene table)_ |
| gx.put | Uploads a table to the platform |
| gx.searchRegulators | Regulator search |
| gx.trackToGeneSet | Track to gene set |
| gx.upstreamAnalysisTransfacGeneWays | Runs the workflow _Upstream analysis (TRANSFAC(R) and... |
| gx.upstreamAnalysisTransfacTranspath | Runs the workflow _Upstream analysis (TRANSFAC(R) and... |
| gx.vennDiagrams | Create a Venn diagram for up to three tables. |
| gx.workflow | Executes workflow with specified parameters |
