gx.trackToGeneSet: Track to gene set

In genexplain/geneXplainR: An R interface for the geneXplain platform

Track to gene set

Description

Maps one or more tracks to genes of the most recent Ensembl release

Usage

gx.trackToGeneSet(tracks, species, from, to, resultTypes = c("Count"),
  allGenes = F, destPath, wait = T, verbose = T)

Arguments

tracks	List of track paths
species	Name of the species
from	Gene region start relative to 5' end of Ensembl gene
to	Gene region end relative to 3' end of Ensembl gene
resultTypes	List of statistics to report (Schematic, + or -, Count, Count in exons, Count in introns, Count in 5', Count in 3', Structure, Positions)
allGenes	True if all genes shall be reported regardless of hit
destPath	output path
wait	True to wait for job to complete
verbose	True for more progress info

Value

a string containing the status of the request in JSON format

genexplain/geneXplainR documentation built on Oct. 24, 2023, 8:56 a.m.