geomorph.data.frame: Create a data frame with shape data

In geomorphR/geomorph: Geometric Morphometric Analyses of 2D and 3D Landmark Data

Create a data frame with shape data

Description

A list similar to a data frame to facilitate analysis of shape data.

Usage

geomorph.data.frame(...)

Arguments

...	a list of objects to include in the data frame.

Details

This function produces a list that can be used like a data frame in other analytical functions. The purpose is similar to the function, data.frame, but without the constraint that data must conform to an n (observations) x p (variables) matrix. Rather, the list produced is constrained only by n. List objects can be Procrustes shape variables, matrices, variables, distance matrices, and phylogenetic trees. Results from gpagen can be directly imported into a geomorph.data.frame to utilize the coordinates and centroid size as variables. (See Examples)

Author(s)

Michael Collyer

Examples

## Not run: 
data(plethodon) 
Y.gpa <- gpagen(plethodon$land, PrinAxes = FALSE)
gdf <- geomorph.data.frame(Y.gpa)
attributes(gdf)

gdf <- geomorph.data.frame(Y.gpa, species = plethodon$species, 
site = plethodon$site)
attributes(gdf)

# Using geomorph.data.frame to facilitate analysis
anova(procD.lm(coords ~ Csize + species * site, data = gdf))

## End(Not run)

geomorphR/geomorph documentation built on April 23, 2024, 11:05 p.m.