Preprocess_CancerSite_Methylation450k: The Preprocess_CancerSite_Methylation450k function

In gevaertlab/methylmix: MethylMix: Identifying methylation driven cancer genes

Description

Internal. Pre-processes DNA methylation data from TCGA from Illymina 450k arrays.

Usage

Preprocess_CancerSite_Methylation450k(CancerSite, METdirectory,
  MissingValueThreshold = 0.2)

Arguments

CancerSite	character of length 1 with TCGA cancer code.
METdirectory	character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function.
MissingValueThreshold	threshold for removing samples or genes with missing values.

Value

List with pre processed methylation data for cancer and normal samples.

gevaertlab/methylmix documentation built on May 25, 2019, 5:25 p.m.