Preprocess_CancerSite_Methylation450k: The Preprocess_CancerSite_Methylation450k function

Description Usage Arguments Value

View source: R/Download_Preprocess.R

Description

Internal. Pre-processes DNA methylation data from TCGA from Illymina 450k arrays.

Usage

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Preprocess_CancerSite_Methylation450k(CancerSite, METdirectory,
  MissingValueThreshold = 0.2)

Arguments

CancerSite

character of length 1 with TCGA cancer code.

METdirectory

character with directory where a folder for downloaded files will be created. Can be the object returned by the Download_DNAmethylation function.

MissingValueThreshold

threshold for removing samples or genes with missing values.

Value

List with pre processed methylation data for cancer and normal samples.


gevaertlab/methylmix documentation built on May 25, 2019, 5:25 p.m.