Preprocess_MAdata_Cancer: The Preprocess_MAdata_Cancer function

In gevaertlab/methylmix: MethylMix: Identifying methylation driven cancer genes

Description

Internal. Pre-process gene expression data for cancer samples.

Usage

Preprocess_MAdata_Cancer(CancerSite, Directory, File,
  MissingValueThresholdGene = 0.3, MissingValueThresholdSample = 0.1)

Arguments

CancerSite	TCGA code for the cancer site.
Directory	Directory.
File	File.
MissingValueThresholdGene	threshold for missing values per gene. Genes with a percentage of NAs greater than this threshold are removed. Default is 0.3.
MissingValueThresholdSample	threshold for missing values per sample. Samples with a percentage of NAs greater than this threshold are removed. Default is 0.1.

Value

The data matrix.

gevaertlab/methylmix documentation built on May 25, 2019, 5:25 p.m.