guided_tour: A guided tour path.

In ggobi/tourr: Tour Methods for Multivariate Data Visualisation

A guided tour path.

Description

Instead of choosing new projections at random like the grand tour, the guided tour always tries to find a projection that is more interesting than the current projection.

Usage

guided_tour(
  index_f,
  d = 2,
  alpha = 0.5,
  cooling = 0.99,
  max.tries = 25,
  max.i = Inf,
  search_f = search_geodesic,
  n_sample = 100,
  ...
)

Arguments

index_f	the index function to optimise.
d	target dimensionality
alpha	the initial size of the search window, in radians
cooling	the amount the size of the search window should be adjusted by after each step
max.tries	the maximum number of unsuccessful attempts to find a better projection before giving up
max.i	the maximum index value, stop search if a larger value is found
search_f	the search strategy to use: search_geodesic, search_better, search_better_random, search_polish. Default is search_geodesic.
n_sample	number of samples to generate if search_f is search_polish
...	arguments sent to the search_f

Details

Currently the index functions only work in 2d.

Usually, you will not call this function directly, but will pass it to a method that works with tour paths like animate, save_history or render.

See Also

cmass, holes and lda_pp for examples of index functions. The function should take a numeric matrix and return a single number, preferably between 0 and 1. search_geodesic, search_better, search_better_random for different search strategies

Examples

flea_std <- apply(flea[,1:6], 2, function(x) (x-mean(x))/sd(x))
animate_xy(flea_std, guided_tour(holes()), sphere = TRUE)

animate_xy(flea_std, guided_tour(holes(), search_f = search_better_random), sphere = TRUE)
animate_dist(flea_std, guided_tour(holes(), 1), sphere = TRUE)
animate_xy(flea_std, guided_tour(lda_pp(flea$species)), sphere = TRUE, col = flea$species)

# save_history is particularly useful in conjunction with the
# guided tour as it allows us to look at the tour path in many different
# ways
f <- flea_std[, 1:3]
tries <- replicate(5, save_history(f, guided_tour(holes())), simplify = FALSE)

ggobi/tourr documentation built on April 23, 2024, 11:11 p.m.