Man pages for giby/Linarius
Linarius: A package for phylogeographic studies, with all functions that are missing in both phylogenetic and geographical packages
| allele.count | Function to count allele presence and absence of dominant... |
| allele.frec | Calculation of Allele hetherozygocy with Dominant markers and... |
| allele.hetero | Calculation of Allele frequency with Dominant markers and... |
| boot.reshape.coord | Generate non-focal anamorphosis |
| col.edge.phylo | Coloring terminal branch of trees |
| Darcy.export | Export anamorphosis coordinate to Darcy |
| datagen | Generate a fake dataset fitting allele frequencies and... |
| dist.coord | Computes Murphy's constant |
| distGPS | Compute distance between GPS points |
| dist.pop | Compute genetic distances between populations |
| expend.coord | Adapt distence of GPS coordinates according to distences to a... |
| harmonize.coord | Harmonize anamorphogram with original map |
| heat.points | Makes heat map |
| heat.values | Returns values of color of points for heat-map in RGB system |
| Linarius-package | Analyse of dominant marker data with mixed ploidy levels. |
| RGB.pop | Transform genotype in RGB colors |
| scalebar | Draw a scalebar |
| spTransform.coord | Prepare projected points for Darcy export |
