dist.pop: Compute genetic distances between populations

In giby/Linarius: Linarius: A package for phylogeographic studies, with all functions that are missing in both phylogenetic and geographical packages

Description

Returns a dist object with genetic distences between populations. 4 indexes are availlable: "Euclidean", "Reynolds", "Roger" and "Nei".

Usage

dist.pop(xx, pop, method = "reynolds", ploidy = 2)

Arguments

xx	A binary datafram of genotypes, individuals as row and alleles as column
pop	A vector informing of population every sample belongs to
method	A method for computing genetic distence between populations, can be any unambigous abreviation of "euclidean", "reynolds", "roger" or "nei"
ploidy	Interger or vector, ploidy level of the population or individuals

Examples

data(Birch)
dist.pop(Betula, code$Pop,ploidy=code$Ploidy,method="rey") 

giby/Linarius documentation built on May 17, 2019, 4:20 a.m.