CountsToAI: Calculates allelic imbalance from merged counts over given...
In gimelbrantlab/ASE:
Description
Usage
Arguments
Value
View source: R/ASE_functions.R
Description
Calculates allelic imbalance from merged counts over given replicates (ai(sum_reps(gene))).
Usage
1
CountsToAI(df, reps = NA)
Arguments
df
A dataframe of genes/transcripts and parental counts for technical replicates in columns.
reps
An optional parameter for a range op replicates for consideration (default = all replicates in df).
Value
mean(mean(m_1,...,m_6))_SNP / mean(mean(m_1+p_1,...,m_6+p6))_SNP.
gimelbrantlab/ASE documentation built on March 1, 2020, 5:41 a.m.
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Description Usage Arguments Value
View source: R/ASE_functions.R
Description
Calculates allelic imbalance from merged counts over given replicates (ai(sum_reps(gene))).
Usage
1 | CountsToAI(df, reps = NA)
|
Arguments
df |
A dataframe of genes/transcripts and parental counts for technical replicates in columns. |
reps |
An optional parameter for a range op replicates for consideration (default = all replicates in df). |
Value
mean(mean(m_1,...,m_6))_SNP / mean(mean(m_1+p_1,...,m_6+p6))_SNP.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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