CreateMergedDeltaAIPairwiseDF: Creates a techreps-row-concatenated table of parwise...

In gimelbrantlab/ASE:

Description

Creates a techreps-row-concatenated table of parwise comparisons for techreps in given table, via CreateDeltaAIPairwiseDF().

Usage

CreateMergedDeltaAIPairwiseDF(df, thrs = 2^c(0:12), thrsSide = "both",
  mlns = F, repcolmns = F, what = "noname")

Arguments

df	A dataframe of genes/transcripts and parental counts for technical replicates in columns.
thrs	An optional vector of thresholds (default = 2**c(0:12)).
thrsSide	An optional parameter of threshold side: 'both' or 'low' (default = 'both').
mlns	An optionsl binary parameter: if the file contains data of millionr read sampling, FALSE or TRUE (default = F).
repcolmns	An optional parameter for a range op replicates for consideration, it can be subreplicates in case of files with millions, as far there 5x columns per each (default = all replicates in df).
what	A name, is needed if not mlns and no names in list (default = "noname").

Value

A techreps-row-concatenated table of parwise comparisons for techreps.

gimelbrantlab/ASE documentation built on March 1, 2020, 5:41 a.m.