calculate_tbt_negative_ptms: Analyse negative cross talk events in domains.

In ginnyintifa/PTMscape:

Description

Test for enrichment of two user provided PTM types inside of domains.

Usage

calculate_tbt_negative_ptms(anchor_mod, cross_mod, anchor_mapped_df_Rds,
  cross_mapped_df_Rds, output_label)

Arguments

anchor_mod	A string indicating the anchor modification.
cross_mod	A string indicating the other modification.
anchor_mapped_df_Rds	An Rds file containing the window score file of anchor PTM mapped domain.
cross_mapped_df_Rds	An Rds file containing the window score file of the other PTM with mapped domain.
output_label	The string to tag the output files.

Examples

calculate_tbt_negative_ptms(anchor_mod = "ubi",
                            cross_mod = "acety",
                            anchor_mapped_df_Rds = "ubi_0103_mapped_df.Rds",
                            cross_mapped_df_Rds = "acety_0103_mapped_df.Rds",
                            output_label = "ubi_acety_negtive")

ginnyintifa/PTMscape documentation built on Nov. 9, 2021, 10:39 p.m.