calculate_tbt_positive_ptms: Analyse positive cross talk events in domains.

In ginnyintifa/PTMscape:

Description

Test for enrichment of two user provided PTM types inside of domains.

Usage

calculate_tbt_positive_ptms(distance = 5, anchor_mod, cross_mod,
  anchor_mapped_df_Rds, cross_mapped_df_Rds, output_label)

Arguments

distance	A numerical value indicating distance between two PTM sites (defaul set to 5).
anchor_mod	A string indicating the anchor modification.
cross_mod	A string indicating the other modification.
anchor_mapped_df_Rds	An Rds file containing the window score file of anchor PTM mapped domain.
cross_mapped_df_Rds	An Rds file containing the window score file of the other PTM with mapped domain.
output_label	The string to tag the output files.

Examples

calculate_tbt_positive_ptms(distance = 5,
                       anchor_mod = "ps",
                       cross_mod = "pt",
                       anchor_mapped_df_Rds = "ps_0103_mapped_df.Rds",
                       cross_mapped_df_Rds = "pt_0103_mapped_df.Rds",
                       output_label = "pt_ps_positive")

ginnyintifa/PTMscape documentation built on Nov. 9, 2021, 10:39 p.m.