cophenetic.phylo: Pairwise Distances from a Phylogenetic Tree
In gjuggler/ape: Analyses of Phylogenetics and Evolution
Description
Usage
Arguments
Value
Author(s)
See Also
Description
cophenetic.phylo computes the pairwise distances between the
pairs of tips from a phylogenetic tree using its branch lengths.
dist.nodes does the same but between all nodes, internal and
terminal, of the tree.
Usage
1
2
3
## S3 method for class 'phylo'
cophenetic(x)
dist.nodes(x)
Arguments
x
an object of class "phylo".
Value
a numeric matrix with colnames and rownames set to the names of the
tips (as given by the element tip.label of the argument
phy), or, in the case of dist.nodes, the numbers of the
tips and the nodes (as given by the element edge).
Author(s)
Emmanuel Paradis
See Also
read.tree to read tree files in Newick format,
cophenetic for the generic function
gjuggler/ape documentation built on May 17, 2019, 6:03 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also
Description
cophenetic.phylo computes the pairwise distances between the
pairs of tips from a phylogenetic tree using its branch lengths.
dist.nodes does the same but between all nodes, internal and
terminal, of the tree.
Usage
1 2 3 | ## S3 method for class 'phylo'
cophenetic(x)
dist.nodes(x)
|
Arguments
x |
an object of class |
Value
a numeric matrix with colnames and rownames set to the names of the
tips (as given by the element tip.label of the argument
phy), or, in the case of dist.nodes, the numbers of the
tips and the nodes (as given by the element edge).
Author(s)
Emmanuel Paradis
See Also
read.tree to read tree files in Newick format,
cophenetic for the generic function
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.