R/modifyModel.R

In glotaran/TIMP: Fitting Separable Nonlinear Models in Spectroscopy and Microscopy

"modifyModel" <- function(model = list(), newest = list(),
                          exceptslots = vector()) {
  if (length(newest) == 0) {
    theta <- get(".currTheta", envir = .GlobalEnv)[[1]]
  } else {
    theta <- newest$currTheta[[1]]
  }
  if (length(model) == 0) {
    m <- get(".currModel", envir = .GlobalEnv)@model
  } else {
    m <- model
  }
  if (length(exceptslots) > 0) {
    nm <- slotNames(theta)[-which(slotNames(theta) %in% exceptslots)]
  } else {
    nm <- slotNames(theta)
  }

  nm <- intersect(nm, slotNames(m))

  arglist <- as.list(m@datCall[[length(m@datCall)]])
  aa <- list()
  for (i in 2:length(arglist)) {
    aa[[names(arglist)[i]]] <- arglist[[i]]
  }
  for (i in 1:length(nm)) {
    aa[[nm[i]]] <- slot(theta, nm[i])
  }

  do.call("initModel", aa)
}