Files in gmelloni/PrecisionTrialDesigner
A Tool to Analyze and Design NGS Based Custom Gene Panels

.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.github/workflows/check-standard.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/.gitkeep
R/annotateGeneLength.R R/annotateVariationLength.R R/cancerPanelClass.R R/cancerPanelGetters.R R/cancerPanelShow.R R/checkDataAvailability.R R/coocMutEx.R R/copynumberHelper.R R/coveragePlot.R R/coverageStack.R R/cpFreq.R R/cpHelper.R R/dataExtractor.R R/expressionHelper.R R/filterFusions.R R/filterMutations.R R/getAlterations.R R/mutationHelper.R R/panelDesigner.R R/panelDesignerHelper.R R/panelOptimizer.R R/panelOptimizerClassAndMethods.R R/panelOptimizerClassHelper.R R/propPowerSampleSize.R R/reposAppend.R R/saturationPlot.R R/showTumorType.R R/subsetAlterations.R R/survPowerSampleSize.R R/survPowerSampleSize1Arm.R R/tumWeightsFreqsHelper.R R/utilitiesFunctions.R README.md
data/.gitkeep
data/cpDesign.RData
data/cpObj.RData
data/cpObj2.RData
data/panelexample.RData
inst/.gitkeep
inst/CITATION
inst/extdata/CancerPanel_input_template.csv
inst/extdata/TCGAtranslocation.rds
inst/extdata/TCGAtranslocationSamples.rds
inst/extdata/cancerpanel_format.csv
inst/extdata/sharp_init_dataset.csv
man/.gitkeep
man/CancerPanel-class.Rd man/PrecisionTrialDrawer-package.Rd man/appendRepo.Rd man/coocMutexPlot.Rd man/coveragePlot.Rd man/coverageStackPlot.Rd man/cpArguments.Rd man/cpData.Rd man/cpDataSubset.Rd man/cpDesign.Rd man/cpFreq.Rd man/cpObj.Rd man/cpObj2.Rd man/dataExtractor.Rd man/filterFusions.Rd man/filterMutations.Rd man/getAlterations.Rd man/newCancerPanel.Rd man/panelDesigner.Rd man/panelOptimizer.Rd man/panelexample.Rd man/propPowerSampleSize.Rd man/saturationPlot.Rd man/showCancerStudy.Rd man/showTumorType.Rd man/subsetAlterations.Rd man/survPowerSampleSize.Rd man/survPowerSampleSize1Arm.Rd
vignettes/.gitkeep
vignettes/PrecisionTrialDrawer.Rmd
gmelloni/PrecisionTrialDesigner documentation built on March 3, 2023, 6:10 a.m.