cpDesign: Example of a cancer panel design export
In gmelloni/PrecisionTrialDesigner: A Tool to Analyze and Design NGS Based Custom Gene Panels
cpDesign R Documentation
Example of a cancer panel design export
Description
Bed style export of cpObj
Usage
data(cpDesign)
Format
A design is a list composed by four elements:
GeneIntervals:all CDS and CDS + UTR
for all the genes in the panel
TargetIntervals:all requested target regions
(specific single mutations) divided and collapsed by gene symbol
FullGenes:gene symbols of the
genes considered for their full sequence
BedStylePanel:the entire panel in bed format,
merged by chromosome, start and end.
Source
Derived from running panelDesigner on cpObj
Examples
#Load cpDesign and show its structure
data(cpDesign)
str(cpDesign)
gmelloni/PrecisionTrialDesigner documentation built on March 3, 2023, 6:10 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| cpDesign | R Documentation |
Example of a cancer panel design export
Description
Bed style export of cpObj
Usage
data(cpDesign)
Format
A design is a list composed by four elements:
GeneIntervals:all CDS and CDS + UTR for all the genes in the panel
TargetIntervals:all requested target regions (specific single mutations) divided and collapsed by gene symbol
FullGenes:gene symbols of the genes considered for their full sequence
BedStylePanel:the entire panel in bed format, merged by chromosome, start and end.
Source
Derived from running panelDesigner on cpObj
Examples
#Load cpDesign and show its structure data(cpDesign) str(cpDesign)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.