Files in gnyamundanda/exploBATCH
Explore batch effect (exploBATCH) is a package for discovering and correcting for batch effect using an approach in Nyamundanda et al (2017).
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/Aitkenf.R
R/RcppExports.R
R/assessComBat.R
R/assessCorrectBATCH.R
R/chol.inv.R
R/correctBatch.R
R/correctComBat.R
R/emQ.R
R/expBATCH.R
R/findBATCH.R
R/iniA.R
R/jEM.R
R/mdiag.R
R/pcaBeforeCorrection.R
R/pen.R
R/ppcca.R
R/ppccaBeforeCorrection.R
R/ppccajack.R
R/rowVar.R
R/scalingfn.R
R/standardize.R
R/unlistfn.R
README.md
data/batchBreast.rda
data/batchColon.rda
data/bioCL.rda
exploBATCH.Rproj
man/.Rapp.history
man/Aitkenf.Rd
man/assessComBat.Rd
man/assessCorrectBATCH.Rd
man/batchBreast.Rd
man/batchColon.Rd
man/bioCL.Rd
man/chol.inv.Rd
man/correctBatch.Rd
man/correctComBat.Rd
man/emQ.Rd
man/expBATCH.Rd
man/exploBATCH-package.Rd
man/findBATCH.Rd
man/iniA.Rd
man/jEM.Rd
man/mdiag.Rd
man/pcaBeforeCorrection.Rd
man/pen.Rd
man/ppcca.Rd
man/ppccaBeforeCorrection.Rd
man/ppccajack.Rd
man/rcpparma_hello_world.Rd
man/rowVar.Rd
man/scalingfn.Rd
man/standardize.Rd
man/unlistfn.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/rcpparma_hello_world.cpp
src/tmp2.cpp
vignettes/manual.Rmd
vignettes/manual.html
