Aitkenf | Function for assessing model convergence |
assessComBat | Assessing ComBat corrected data |
assessCorrectBATCH | Assessing data corrected for batch effect using correctBATCH. |
batchBreast | A vector identifying batches in the breast dataset. |
batchColon | A vector identifying batches in the colon dataset. |
bioCL | A vector identifying tumor and normal samples in the colon... |
chol.inv | Matrix inversion |
correctBatch | Batch correction approach based on the PPCCA model. |
correctComBat | Batch correction with ComBat |
emQ | EM algorithm for PPCA model. |
expBATCH | Discovering and correcting batch effect. |
exploBATCH-package | Explore batch effect (exploBATCH) is a package for... |
findBATCH | A function to formally tests presence of batch effect. |
iniA | Function for initializing regression on the LVs. |
jEM | EM algorithm for PPCCA model jackkniifing. |
mdiag | Sum diagonal elements of a matrix |
pcaBeforeCorrection | PCA before correction. |
pen | Penalty term for BIC |
ppcca | Fitting PPCCA model |
ppccaBeforeCorrection | PPCCA before correction. |
ppccajack | Fitting PPCCA model with jackknifing |
rcpparma_hello_world | Set of functions in example RcppArmadillo package |
rowVar | Row variance |
scalingfn | Scaling of data |
standardize | Function for standardizing covariates |
unlistfn | Unlist an lapply function |
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