Man pages for gongx030/tcm
TCM visualizes trajectories and cell populations from single cell data

add.pathsadd.paths
add.paths.landscapePlot the paths on the prototype landscape
as.igraphas.igraph
as.igraph.landscapeGet an igraph object of neighboring graph of the prototype...
ccmCorrelated Cell Model
ccrCorrelated Cell Regression
centersAdd the labels of active prototypes
fastmdsfastmds
gtmgtm
gtm.coreThe generative topographic model
jitter2Adding an Enclidean noise, x must be in a two dimensional...
landscapelandscape
ldpoislog density of Poission distribution (faster than dpois(...,...
learning.ratelearning rate for stochastic variational inference
num2colornum2color
plot.tcmplot.tcm
pseudotime.tableGet a time table that consider the pseodotime information
set.controlSetting the default values for the arguments for optimizing...
sim.rnaseq.tssim.rnaseq.ts
softmaxsoftmax
split.dataSplitting data into different batches
tcmTCM: A package for visualizing temporal scRNA-seq data
tcm.coreThe core function for optimizaing TCM
trajectoryFind the trajectory
update.localvarupdating local variable E[V], E[exp(V)], a and E[Z]
gongx030/tcm documentation built on Sept. 22, 2018, 5:41 p.m.