landscape: landscape

In gongx030/tcm: TCM visualizes trajectories and cell populations from single cell data

Description

Define the prototype landscape for simulating and visualizing scRNA-seq data

Usage

landscape(type = "temporal.convolving", K = 15, ...)

Arguments

type	type of the prototype landscape (default: temporal.convolving)
n.prototype	prototypes per layer
n.circle	the number of layer
n.prev	number of convolving layers per time point

Value

a landscape object

Author(s)

Wuming Gong, [e-mail]

Examples

# a temporal convolving landscape with the following parameters:
#  number of metagenes (K): 15
#  number of prototypes per layer (n.prototype): 15
#  number of layers per time point (n.circle): 10
#  number of convolving layers per time point (n.prev): 3
ls <- landscape(type = 'temporal.convolving', K = 15, n.prototype = 15, n.circle = 10, n.prev = 3)

# a plate landscape with following parameters:
#  number of metagenes (K): 15
#  number of prototypes per layer (n.prototype): 10
#  number of layers (n.circle): 100
ls <- landscape(type = 'plate', K = 15, n.prototype = 10, n.circle = 100)

gongx030/tcm documentation built on June 4, 2019, 7:26 p.m.