plot.tcm: plot.tcm
In gongx030/tcm: TCM visualizes trajectories and cell populations from single cell data
Description
Usage
Arguments
Author(s)
Examples
Description
Plot the TCM results
Usage
1
2
Arguments
x
a tcm object
...
Further graphical parameters may also be supplied as arguments
Author(s)
Wuming Gong, gongx030@umn.edu
Examples
1
2
3
4
5
6
7
8
9
10
library(tcm)
set.seed(122)
sim <- sim.rnaseq.ts(N = 2000, M = 500, n.lineage = 5, n.time.points = 5)
X <- assays(sim)$count
time.table <- colData(sim)$time.table
mf <- tcm(X, time.table = time.table)
bg.cell <- rainbow(5)[colData(sim)$lineage]
dev.new(height = 10, width = 12)
par(mar = c(5, 5, 5, 15))
plot(mf, pch = 21, bg = bg.cell, cex = 1.5)
gongx030/tcm documentation built on June 4, 2019, 7:26 p.m.
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Description Usage Arguments Author(s) Examples
Description
Plot the TCM results
Usage
1 2 |
Arguments
x |
a tcm object |
... |
Further graphical parameters may also be supplied as arguments |
Author(s)
Wuming Gong, gongx030@umn.edu
Examples
1 2 3 4 5 6 7 8 9 10 | library(tcm)
set.seed(122)
sim <- sim.rnaseq.ts(N = 2000, M = 500, n.lineage = 5, n.time.points = 5)
X <- assays(sim)$count
time.table <- colData(sim)$time.table
mf <- tcm(X, time.table = time.table)
bg.cell <- rainbow(5)[colData(sim)$lineage]
dev.new(height = 10, width = 12)
par(mar = c(5, 5, 5, 15))
plot(mf, pch = 21, bg = bg.cell, cex = 1.5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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