calcFractionalCopyNumbers: Calculation of fractional copy numbers for the CNVs and CNV...
In gpovysil/cn.mops: cn.mops - Mixture of Poissons for CNV detection in NGS data
calcFractionalCopyNumbers R Documentation
Calculation of fractional copy numbers for the CNVs and CNV regions.
Description
This generic function calculates the fractional copy
numbers of a CNV detection method stored in an instance
of CNVDetectionResult-class. Must be a
result of "referencecn.mops".
Arguments
object
An instance of "CNVDetectionResult"
segStat
Which statistic per segment should be
used. Can be either "mean" or "median".
(Default="mean").
Value
calcFractionalCopyNumbers returns an instance of
"CNVDetectionResult".
Author(s)
Guenter Klambauer klambauer@bioinf.jku.at
Examples
data(cn.mops)
r <- referencecn.mops(X[,1:2],apply(X,1,median))
calcFractionalCopyNumbers(r)
gpovysil/cn.mops documentation built on Feb. 4, 2024, 10:18 a.m.
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| calcFractionalCopyNumbers | R Documentation |
Calculation of fractional copy numbers for the CNVs and CNV regions.
Description
This generic function calculates the fractional copy
numbers of a CNV detection method stored in an instance
of CNVDetectionResult-class. Must be a
result of "referencecn.mops".
Arguments
object |
An instance of "CNVDetectionResult" |
segStat |
Which statistic per segment should be used. Can be either "mean" or "median". (Default="mean"). |
Value
calcFractionalCopyNumbers returns an instance of
"CNVDetectionResult".
Author(s)
Guenter Klambauer klambauer@bioinf.jku.at
Examples
data(cn.mops)
r <- referencecn.mops(X[,1:2],apply(X,1,median))
calcFractionalCopyNumbers(r)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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