calcFractionalCopyNumbers: Calculation of fractional copy numbers for the CNVs and CNV...

calcFractionalCopyNumbersR Documentation

Calculation of fractional copy numbers for the CNVs and CNV regions.

Description

This generic function calculates the fractional copy numbers of a CNV detection method stored in an instance of CNVDetectionResult-class. Must be a result of "referencecn.mops".

Arguments

object

An instance of "CNVDetectionResult"

segStat

Which statistic per segment should be used. Can be either "mean" or "median". (Default="mean").

Value

calcFractionalCopyNumbers returns an instance of "CNVDetectionResult".

Author(s)

Guenter Klambauer klambauer@bioinf.jku.at

Examples

data(cn.mops)
r <- referencecn.mops(X[,1:2],apply(X,1,median))
calcFractionalCopyNumbers(r)

gpovysil/cn.mops documentation built on Aug. 7, 2024, 12:45 p.m.