iniCall-CNVDetectionResult-method: This generic function returns the informative/non-informative...
In gpovysil/cn.mops: cn.mops - Mixture of Poissons for CNV detection in NGS data
iniCall,CNVDetectionResult-method R Documentation
This generic function returns the informative/non-informative call of
a CNV detection method stored in an instance of
CNVDetectionResult-class.
The I/NI call is a measure for a genomic
segment across all samples, whether this segment is a CNV region
(informative) or a normal genomic region (non-informative).
Description
This generic function returns the informative/non-informative call of
a CNV detection method stored in an instance of
CNVDetectionResult-class.
The I/NI call is a measure for a genomic
segment across all samples, whether this segment is a CNV region
(informative) or a normal genomic region (non-informative).
Usage
## S4 method for signature 'CNVDetectionResult'
iniCall(object)
Arguments
object
An instance of "CNVDetectionResult"
Value
iniCall returns a "GRanges" object containing
the individual calls.
Author(s)
Guenter Klambauer klambauer@bioinf.jku.at
Examples
data(cn.mops)
r <- cn.mops(X[1:100,1:5])
iniCall(r)
gpovysil/cn.mops documentation built on Feb. 4, 2024, 10:18 a.m.
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| iniCall,CNVDetectionResult-method | R Documentation |
This generic function returns the informative/non-informative call of
a CNV detection method stored in an instance of
CNVDetectionResult-class.
The I/NI call is a measure for a genomic
segment across all samples, whether this segment is a CNV region
(informative) or a normal genomic region (non-informative).
Description
This generic function returns the informative/non-informative call of
a CNV detection method stored in an instance of
CNVDetectionResult-class.
The I/NI call is a measure for a genomic
segment across all samples, whether this segment is a CNV region
(informative) or a normal genomic region (non-informative).
Usage
## S4 method for signature 'CNVDetectionResult'
iniCall(object)
Arguments
object |
An instance of "CNVDetectionResult" |
Value
iniCall returns a "GRanges" object containing
the individual calls.
Author(s)
Guenter Klambauer klambauer@bioinf.jku.at
Examples
data(cn.mops)
r <- cn.mops(X[1:100,1:5])
iniCall(r)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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