Files in gpovysil/cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS data
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/calcFractionalCopyNumbers.R
R/calcIntegerCopyNumbers.R
R/cn.mops.R
R/exomecn.mops.R
R/getReadCountsFromBAM.R
R/getSegmentReadCountsFromBAM.R
R/haplocn.mops.R
R/makeRobustCNVR.R
R/methodsAccess.R
R/normalizeChromosomes.R
R/normalizeGenome.R
R/plot-methods.R
R/referencecn.mops.R
R/segPlot.R
R/segment.R
R/show-methods.R
R/singlecn.mops.R
R/zzz.R
data/cn.mops.RData
inst/CITATION
inst/extdata/test1.bam
inst/extdata/test1.bam.bai
inst/extdata/test2.bam
inst/extdata/test2.bam.bai
inst/extdata/test3.bam
inst/extdata/test3.bam.bai
man/CNVDetectionResult.Rd
man/CNVRanges.Rd
man/X.Rd
man/XRanges.Rd
man/calcFractionalCopyNumbers-CNVDetectionResult-method.Rd
man/calcFractionalCopyNumbers.Rd
man/calcIntegerCopyNumbers-CNVDetectionResult-method.Rd
man/calcIntegerCopyNumbers.Rd
man/cn.mops.Rd
man/cnvr-CNVDetectionResult-method.Rd
man/cnvr.Rd
man/cnvs-CNVDetectionResult-method.Rd
man/cnvs.Rd
man/exomeCounts.Rd
man/exomecn.mops.Rd
man/getReadCountsFromBAM.Rd
man/getSegmentReadCountsFromBAM.Rd
man/gr-CNVDetectionResult-method.Rd
man/gr.Rd
man/haplocn.mops.Rd
man/individualCall-CNVDetectionResult-method.Rd
man/individualCall.Rd
man/iniCall-CNVDetectionResult-method.Rd
man/iniCall.Rd
man/integerCopyNumber-CNVDetectionResult-method.Rd
man/integerCopyNumber.Rd
man/localAssessments-CNVDetectionResult-method.Rd
man/localAssessments.Rd
man/makeRobustCNVR.Rd
man/normalizeChromosomes.Rd
man/normalizeGenome.Rd
man/normalizedData-CNVDetectionResult-method.Rd
man/normalizedData.Rd
man/params-CNVDetectionResult-method.Rd
man/params.Rd
man/plot.Rd
man/posteriorProbs-CNVDetectionResult-method.Rd
man/posteriorProbs.Rd
man/referencecn.mops.Rd
man/sampleNames-CNVDetectionResult-method.Rd
man/sampleNames.Rd
man/segment.Rd
man/segmentation-CNVDetectionResult-method.Rd
man/segmentation.Rd
man/segplot-CNVDetectionResult-method.Rd
man/segplot.Rd
man/show.Rd
man/singlecn.mops.Rd
src/R_init_cnmops.c
src/cn.mops.h
src/cnmops.cpp
src/segment.cpp
vignettes/bioinf-article.txi
vignettes/bioinf-bar.png
vignettes/bioinf.cls
vignettes/cn.mops.Rnw
vignettes/cnv.bib
vignettes/natbib.bst
vignettes/natbib.sty
