parse_vcf: parse through vcf file so it can be used in R
In greymonroe/polymorphology: Functions from Monroe et al 2022
parse_vcf R Documentation
parse through vcf file so it can be used in R
Description
parse through vcf file so it can be used in R
Usage
parse_vcf(vcf_file, snpeff = F)
Arguments
vcf_file
file name vcf data from gatk haplotypecaller
snpeff
boolean: the vcf is annotated with snpeff, default = F
Value
a data.table object with parsed vcf, new columns for various quality meaures, statistics, annotations, etc
greymonroe/polymorphology documentation built on Aug. 6, 2023, 1:33 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| parse_vcf | R Documentation |
parse through vcf file so it can be used in R
Description
parse through vcf file so it can be used in R
Usage
parse_vcf(vcf_file, snpeff = F)
Arguments
vcf_file |
file name vcf data from gatk haplotypecaller |
snpeff |
boolean: the vcf is annotated with snpeff, default = F |
Value
a data.table object with parsed vcf, new columns for various quality meaures, statistics, annotations, etc
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.