region_counts: add counts of variants to gff data object
In greymonroe/polymorphology: Functions from Monroe et al 2022
View source: R/region_counts.R
region_counts R Documentation
add counts of variants to gff data object
Description
add counts of variants to gff data object
Usage
region_counts(regions, vcf)
Arguments
regions
data.table object with columns chr, start, stop
vcf
data.table object of variant data (data.table with CHROM, POS, REF, and ALT columns)
Value
a vector of variant counts for each row of input gff
greymonroe/polymorphology documentation built on Aug. 6, 2023, 1:33 a.m.
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View source: R/region_counts.R
| region_counts | R Documentation |
add counts of variants to gff data object
Description
add counts of variants to gff data object
Usage
region_counts(regions, vcf)
Arguments
regions |
data.table object with columns chr, start, stop |
vcf |
data.table object of variant data (data.table with CHROM, POS, REF, and ALT columns) |
Value
a vector of variant counts for each row of input gff
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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