tss_tts.tajima: extract relative position of polymorphisms in relation to...

In greymonroe/polymorphology: Functions from Monroe et al 2022

extract relative position of polymorphisms in relation to gene bodies

Description

extract relative position of polymorphisms in relation to gene bodies

Usage

tss_tts.tajima(
  gff,
  tajima,
  chrs = "all",
  num = "all",
  loc = "both",
  feature = "gene"
)

Arguments

gff	directory and file name of reference gff OR data.table object of gff data
tajima	directory and file name tajima data OR data.table object of tajima data (data.table with CHROM, BIN_START, N_SNPS, and TajimaD columns)
chrs	selection specific chromosomes, default is "all"
num	set number of genes, default is "all
loc	"tss" or "tts"
feature	name of the feature in the gff data that you want to look in relation to, default is "gene"

Value

data.table with pos and D columns

greymonroe/polymorphology documentation built on Aug. 6, 2023, 1:33 a.m.