API for grimbough/biomaRt
Interface to BioMart databases (i.e. Ensembl)
| Global functions | |
|---|---|
| .addToCache | Source code |
| .biomartCacheLocation | Source code |
| .checkArchiveList | Source code |
| .checkEnsemblSSL | Source code |
| .checkInCache | Source code |
| .checkSequenceArgs | Source code |
| .checkValidCache | Source code |
| .chooseEnsemblMirror | Source code |
| .cleanHostURL | Source code |
| .constructEnsemblURL | Source code |
| .createErrorMessage | Source code |
| .createFilterXMLchunk | Source code |
| .createHash | Source code |
| .currentEnsemblVersion | Source code |
| .ensemblMapsToEntrezId | Source code |
| .fetchHTMLresults | Source code |
| .generateFilterXML | Source code |
| .getArchiveList | Source code |
| .getAttrFilt | Source code |
| .getAttributes | Source code |
| .getEnsemblSSL | Source code Source code |
| .getFilters | Source code |
| .getSequenceFromCoords | Source code |
| .getSequenceFromId | Source code |
| .keys | Source code |
| .listDatasets | Source code |
| .listEnsembl | Source code |
| .listEnsemblArchives | Source code |
| .listMarts | Source code |
| .processResults | Source code |
| .readFromCache | Source code |
| .searchInternal | Source code |
| .setResultColNames | Source code |
| .shrinkDatasetName | Source code |
| .splitValues | Source code |
| .submitQueryXML | Source code |
| .test_ensembl | Source code |
| .useCache | Source code |
| .useMart | Source code |
| Mart-class | Man page |
| NP2009code | Man page Source code |
| attributePages | Man page Source code |
| biomaRt-deprecated | Man page |
| biomartCacheClear | Man page Source code |
| biomartCacheInfo | Man page Source code |
| bmRequest | Source code |
| bmVersion | Source code |
| checkDataset | Source code |
| checkWrapperArgs | Source code |
| columns | Man page |
| columns,Mart-method | Man page |
| createNameToAliasMap | Source code |
| exportFASTA | Man page Source code |
| filterOptions | Man page Source code |
| filterType | Man page Source code |
| findGenomeName | Source code |
| getBM | Man page Source code |
| getBMlist | Man page |
| getCurrentEnsemblRelease | Source code |
| getGene | Man page Source code |
| getHomologs | Man page Source code |
| getLDS | Man page Source code |
| getSequence | Man page Source code |
| keys | Man page |
| keys,Mart-method | Man page |
| keytypes | Man page |
| keytypes,Mart-method | Man page |
| listAttributes | Man page Source code |
| listDatasets | Man page Source code |
| listEnsembl | Man page Source code |
| listEnsemblArchives | Man page Source code |
| listEnsemblGenomes | Man page Source code |
| listFilesInEnsemblFTP | Source code |
| listFilterOptions | Man page Source code |
| listFilterValues | Man page Source code |
| listFilters | Man page Source code |
| listMarts | Man page Source code |
| martCheck | Source code |
| pickReferenceStrain | Source code |
| pickReferenceStrain_msg | Source code |
| searchAttributes | Man page Source code |
| searchDatasets | Man page Source code |
| searchFilterOptions | Man page Source code |
| searchFilterValues | Man page Source code |
| searchFilters | Man page Source code |
| select | Man page |
| select,Mart-method | Man page |
| select-methods | Man page |
| setEnsemblSSL | Man page Source code |
| show,Mart-method | Man page |
| useDataset | Man page Source code |
| useEnsembl | Man page Source code |
| useEnsemblGenomes | Man page Source code |
| useMart | Man page Source code |
