exportFASTA: Exports getSequence results to FASTA format

In grimbough/biomaRt: Interface to BioMart databases (i.e. Ensembl)

Exports getSequence results to FASTA format

Description

Exports getSequence results to FASTA format

Usage

exportFASTA(sequences, file)

Arguments

sequences	A data.frame that was the output of the getSequence function
file	File to which you want to write the data

Author(s)

Steffen Durinck

Examples

if(interactive()){
    mart <- useMart("ensembl", dataset="hsapiens_gene_ensembl")
    
    #seq<-getSequence(chromosome=c(2,2),start=c(100000,30000),end=c(100300,30500),mart=mart)
    #exportFASTA(seq,file="test.fasta")
    
}

grimbough/biomaRt documentation built on Aug. 7, 2024, 8:56 p.m.