Man pages for grimbough/biomaRt
Interface to BioMart databases (i.e. Ensembl)
| attributePages | Gives a summary of the attribute pages |
| biomartCache | biomaRt result caching |
| biomaRt-deprecated | Deprecated and defunct functions in package 'biomaRt' |
| exportFASTA | Exports getSequence results to FASTA format |
| filterType | Displays the filter type |
| getBM | Retrieves information from the BioMart database |
| getGene | Retrieves gene annotation information given a vector of... |
| getHomologs | List homologous genes between two species. |
| getLDS | Retrieves information from two linked datasets |
| getSequence | Retrieves sequences |
| listAttributes | lists the attributes available in the selected dataset |
| listDatasets | List or search the datasets available in the selected BioMart... |
| listEnsembl | lists the available BioMart databases hosted by Ensembl |
| listEnsemblArchives | Lists the available archived versions of Ensembl |
| listFilters | List or search the filters available in the selected dataset |
| listFilterValues | List or search the options available for a specified filter. |
| listMarts | lists the available BioMart databases |
| Mart-class | Class Mart |
| NP2009code | Display the analysis code from the 2009 Nature protocols... |
| select | Retrieve information from the BioMart databases |
| setEnsemblSSL | Save system specific SSL settings for contacting Ensembl |
| useDataset | Select a dataset to use and updates Mart object |
| useEnsembl | Connects to the selected BioMart database and dataset hosted... |
| useMart | Connects to the selected BioMart database and dataset |
