grisslab/scAnnotatR: Pretrained learning models for cell type prediction on single cell RNA-sequencing data

The package comprises a set of pretrained machine learning models to predict basic immune cell types. This enables all users to quickly get a first annotation of the cell types present in their dataset without requiring prior knowledge. scAnnotatR also allows users to train their own models to predict new cell types based on specific research needs.

Getting started

Package details

Bioconductor views Classification GeneExpression SingleCell Software SupportVectorMachine Transcriptomics
LicenseMIT + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
grisslab/scAnnotatR documentation built on March 20, 2023, 2:42 a.m.