grisslab/scAnnotatR: Pretrained learning models for cell type prediction on single cell RNA-sequencing data
The package comprises a set of pretrained machine learning models to predict basic immune cell types. This enables all users to quickly get a first annotation of the cell types present in their dataset without requiring prior knowledge. scAnnotatR also allows users to train their own models to predict new cell types based on specific research needs.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | Classification GeneExpression SingleCell Software SupportVectorMachine Transcriptomics |
| Maintainer | |
| License | MIT + file LICENSE |
| Version | 1.5.3 |
| URL | https://github.com/grisslab/scAnnotatR |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
