API for grisslab/scAnnotatR
Pretrained learning models for cell type prediction on single cell RNA-sequencing data
| Global functions | |
|---|---|
| balance_dataset | Man page Source code |
| caret_model | Man page Source code |
| caret_model<- | Man page |
| caret_model<-,scAnnotatR-method | Man page |
| cell_type | Man page Source code |
| cell_type<- | Man page |
| cell_type<-,scAnnotatR-method | Man page |
| checkCaretModelValidity | Man page Source code |
| checkCellTypeValidity | Man page Source code |
| checkMarkerGenesValidity | Man page Source code |
| checkObjectValidity | Man page Source code |
| checkPThresValidity | Man page Source code |
| checkParentValidity | Man page Source code |
| check_parent_child_coherence | Man page Source code |
| classify_cells | Man page Source code |
| classify_cells_sce | Man page Source code |
| classify_cells_seurat | Man page Source code |
| classify_clust | Man page Source code |
| construct_tag_vect | Man page Source code |
| delete_model | Man page Source code |
| download_data_file | Man page Source code |
| filter_cells | Man page Source code |
| load_models | Man page Source code |
| make_prediction | Man page Source code |
| marker_genes | Man page Source code |
| marker_genes<- | Man page |
| marker_genes<-,scAnnotatR-method | Man page |
| p_thres | Man page Source code |
| p_thres<- | Man page |
| p_thres<-,scAnnotatR-method | Man page |
| parent | Man page Source code |
| parent<- | Man page |
| parent<-,scAnnotatR-method | Man page |
| plant_tree | Man page Source code |
| plot_roc_curve | Man page Source code |
| preprocess_sce_object | Man page Source code |
| preprocess_seurat_object | Man page Source code |
| process_parent_classifier | Man page Source code |
| save_new_model | Man page Source code |
| scAnnotatR | Man page Source code |
| select_marker_genes | Man page Source code |
| show,scAnnotatR-method | Man page |
| simplify_prediction | Man page Source code |
| subset_models | Man page Source code |
| test_classifier | Man page |
| test_classifier,scAnnotatR-method | Man page |
| test_classifier_from_mat | Man page Source code |
| test_classifier_sce | Man page Source code |
| test_classifier_seurat | Man page Source code |
| test_performance | Man page Source code |
| tirosh_mel80_example | Man page |
| train_classifier | Man page Source code |
| train_classifier_from_mat | Man page Source code |
| train_classifier_sce | Man page Source code |
| train_classifier_seurat | Man page Source code |
| train_func | Man page Source code |
| transform_to_zscore | Man page Source code |
| verify_parent | Man page Source code |
