In grunwaldlab/metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

This is a diverse set of plots for optimizing the default appearance of plots. It is time-consuming to run, so it will not be run on CRAN servers

Highly branched

library(ape)
library(metacoder)

plot_one <- function(n) {
  set.seed(1)
  parse_phylo(ape::rcoal(n)) %>%
    heat_tree(node_label = taxon_names,
              node_size = n_obs,
              node_color = n_obs,
              title = paste(n, "tips"))
}

tip_counts <- c(2, 3, 5, 10, 30, 100, 500)

for (n in tip_counts) {
  print(plot_one(n))
}

grunwaldlab/metacoder documentation built on Feb. 22, 2024, 3:47 a.m.