API for grunwaldlab/metacoder
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Global functions
.onAttach Man page
DNAbin_to_char Man page Source code
\%>\% Man page
add_alpha Man page Source code
ambiguous_patterns Man page Source code
apply_color_scale Man page Source code
as_phyloseq Man page Source code
calc_group_mean Man page Source code
calc_group_median Man page Source code
calc_group_rsd Man page Source code
calc_group_stat Man page Source code
calc_n_samples Man page Source code
calc_obs_props Man page Source code
calc_prop_samples Man page Source code
calc_taxon_abund Man page Source code
can_be_num Man page Source code
centroid Source code
check_element_length Man page Source code
check_for_pkg Man page Source code
check_option_groups Man page Source code
compare_groups Man page Source code
complement Man page Source code
contains Man page
convert_base Man page Source code
counts_to_presence Man page Source code
deg2rad Source code
diverging_palette Man page Source code
do_calc_on_num_cols Man page Source code
edge_list_depth Man page Source code
ends_with Man page
euclid Source code
everything Man page
fasta_headers Man page Source code
filter_ambiguous_taxa Man page Source code
get_class_from_el Man page Source code
get_edge_children Man page Source code
get_edge_parents Man page Source code
get_expected_data Man page Source code
get_node_children Man page Source code
get_numeric_cols Man page Source code
get_numerics Man page Source code
get_optimal_range Man page Source code
get_taxmap_cols Man page Source code
get_taxmap_data Man page Source code
get_taxmap_other_cols Man page Source code
get_taxmap_table Man page Source code
get_taxonomy_levels Man page Source code
heat_tree Man page Source code
heat_tree.Taxmap Man page Source code
heat_tree.default Man page Source code
heat_tree_matrix Man page Source code
hmp_otus Man page
hmp_samples Man page
inter_circle_gap Man page Source code
intersect_line_rectangle Source code
inverse Man page Source code
is_ambiguous Man page Source code
label_bounds Man page Source code
layout_functions Man page Source code
limited_print Man page Source code
line_coords Man page Source code
look_for_na Man page Source code
make_fasta_with_u_replaced Man page Source code
make_plot_legend Man page Source code
map_unique Man page Source code
matches Man page
metacoder Man page
metacoder-package Man page
molten_dist Man page Source code
my_print Man page Source code
ncbi_sequence Man page Source code
ncbi_taxon_sample Man page Source code
num_range Man page
onAttach Source code
one_of Man page
parse_edge_list Man page Source code
parse_greengenes Man page Source code
parse_mothur_tax_summary Man page Source code
parse_mothur_taxonomy Man page Source code
parse_newick Man page Source code
parse_phylo Man page Source code
parse_phyloseq Man page Source code
parse_primersearch Man page Source code
parse_qiime_biom Man page Source code
parse_rdp Man page Source code
parse_seq_input Man page Source code
parse_silva_fasta Man page Source code
parse_summary_seqs Man page Source code
parse_ubiome Man page Source code
parse_unite_general Man page Source code
polygon_coords Man page Source code
primersearch Man page Source code
primersearch_is_installed Man page Source code
primersearch_raw Man page Source code
qualitative_palette Man page Source code
quantative_palette Man page Source code
rad_to_deg Source code
rarefy_obs Man page Source code
read_fasta Man page Source code
read_lines_apply Man page Source code
repel_boxes Source code
repo_url Man page Source code
rescale Man page Source code
rev_comp Man page Source code
reverse Man page Source code
run_primersearch Man page Source code
scale_bar_coords Man page Source code
select_labels Man page Source code
split_by_level Man page Source code
starts_with Man page
startup_msg Man page Source code
text_grob_length Man page Source code
transform_data Man page Source code
unique_mapping Man page Source code
verify_color_range Man page Source code
verify_label_count Man page Source code
verify_size Man page Source code
verify_size_range Man page Source code
verify_taxmap Man page Source code
verify_trans Man page Source code
write_greengenes Man page Source code
write_mothur_taxonomy Man page Source code
write_rdp Man page Source code
write_silva_fasta Man page Source code
write_unite_general Man page Source code
zero_low_counts Man page Source code
grunwaldlab/metacoder documentation built on Oct. 2, 2018, 10:25 p.m.