taxon_names: Get taxon names

In grunwaldlab/metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Get taxon names

Description

Return the taxon names in a [taxonomy()] or [taxmap()] object. They are in the order they appear in the edge list.

obj$taxon_names()
taxon_names(obj)

Arguments

obj	The [taxonomy()] or [taxmap()] object.

See Also

Other taxonomy data functions: classifications(), id_classifications(), is_branch(), is_internode(), is_leaf(), is_root(), is_stem(), map_data(), map_data_(), n_leaves(), n_leaves_1(), n_subtaxa(), n_subtaxa_1(), n_supertaxa(), n_supertaxa_1(), taxon_ids(), taxon_indexes(), taxon_ranks()

Examples

# Return the names for each taxon
taxon_names(ex_taxmap)

# Filter by taxon name
filter_taxa(ex_taxmap, taxon_names == "Felidae", subtaxa = TRUE)

grunwaldlab/metacoder documentation built on Feb. 22, 2024, 3:47 a.m.