hmp_otus: A HMP subset

Description Format Details Source See Also


A subset of the Human Microbiome Project abundance matrix produced by QIIME. It contains OTU ids, taxonomic lineages, and the read counts for 50 samples. See hmp_samples for the matching dataset of sample information.


A 1,000 x 52 tibble.


The 50 samples were randomly selected such that there were 10 in each of 5 treatments: "Saliva", "Throat", "Stool", "Right_Antecubital_fossa", "Anterior_nares". For each treatment, there were 5 samples from men and 5 from women.


Subset from data available at

See Also

Other hmp_data: hmp_samples

grunwaldlab/metacoder documentation built on Jan. 5, 2019, 6:56 a.m.