hmp_otus: A HMP subset
In grunwaldlab/metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
hmp_otus R Documentation
A HMP subset
Description
A subset of the Human Microbiome Project abundance matrix produced by QIIME.
It contains OTU ids, taxonomic lineages, and the read counts for 50 samples.
See hmp_samples for the matching dataset of sample information.
Format
A 1,000 x 52 tibble.
Details
The 50 samples were randomly selected such that there were 10 in each of 5
treatments: "Saliva", "Throat", "Stool", "Right_Antecubital_fossa",
"Anterior_nares". For each treatment, there were 5 samples from men and 5
from women.
Source
Subset from data available at https://www.hmpdacc.org/hmp/HMQCP/
See Also
Other hmp_data:
hmp_samples
grunwaldlab/metacoder documentation built on Feb. 22, 2024, 3:47 a.m.
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| hmp_otus | R Documentation |
A HMP subset
Description
A subset of the Human Microbiome Project abundance matrix produced by QIIME.
It contains OTU ids, taxonomic lineages, and the read counts for 50 samples.
See hmp_samples for the matching dataset of sample information.
Format
A 1,000 x 52 tibble.
Details
The 50 samples were randomly selected such that there were 10 in each of 5 treatments: "Saliva", "Throat", "Stool", "Right_Antecubital_fossa", "Anterior_nares". For each treatment, there were 5 samples from men and 5 from women.
Source
Subset from data available at https://www.hmpdacc.org/hmp/HMQCP/
See Also
Other hmp_data:
hmp_samples
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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