init_taxmap_data: Convert 'data' input for Taxamp

In grunwaldlab/metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Convert 'data' input for Taxamp

Description

Make sure 'data' is in the right format and complain if it is not. Then, add a 'taxon_id' column to data with the same length as the input

Usage

init_taxmap_data(self, data, input_ids, assume_equal = TRUE)

Arguments

self	The newly created [taxmap()] object
data	The 'data' variable passed to the 'Taxmap' constructor
input_ids	The taxon IDs for the inputs that made the taxonomy
assume_equal	If 'TRUE', and a data set length is the same as the 'input_ids' length, then assume that 'input_ids' applies to the data set as well.

Value

A 'data' variable with the right format

grunwaldlab/metacoder documentation built on Feb. 22, 2024, 3:47 a.m.