taxon_ids: Get taxon IDs

In grunwaldlab/metacoder: Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data

Get taxon IDs

Description

Return the taxon IDs in a [taxonomy()] or [taxmap()] object. They are in the order they appear in the edge list.

obj$taxon_ids()
taxon_ids(obj)

Arguments

obj	The [taxonomy()] or [taxmap()] object.

See Also

Other taxonomy data functions: classifications(), id_classifications(), is_branch(), is_internode(), is_leaf(), is_root(), is_stem(), map_data(), map_data_(), n_leaves(), n_leaves_1(), n_subtaxa(), n_subtaxa_1(), n_supertaxa(), n_supertaxa_1(), taxon_indexes(), taxon_names(), taxon_ranks()

Examples

# Return the taxon IDs for each taxon
taxon_ids(ex_taxmap)

# Filter using taxon IDs
filter_taxa(ex_taxmap, ! taxon_ids %in% c("c", "d"))

grunwaldlab/metacoder documentation built on Feb. 15, 2025, 3:37 p.m.