gbFeature-class: Class '"gbFeature"'
In gschofl/biofiles: An Interface for GenBank/GenPept Flat Files
Description
Slots
Accessor functions
See Also
Description
“gbFeature” is an S4 class that provides a container
for GenBank feature tables.
Slots
.seqinfoAn seqinfo object containing the
full-lenght sequence of the GenBank record that the feature is part
of as an XStringSet object, and sequence metadata
as a gbHeader object.
.idIdentifier (index) of the feature in the GenBank record
the feature is part of.
keyThe feature key.
locationA gbLocation object.
qualifiersA named character vector. Name attributes
correspond to GenBank qualifier tags.
Accessor functions
getHeader, getSequence,
ranges, key, index,
qualif
See Also
gschofl/biofiles documentation built on Sept. 27, 2020, 12:08 a.m.
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Description Slots Accessor functions See Also
Description
“gbFeature” is an S4 class that provides a container for GenBank feature tables.
Slots
.seqinfoAn
seqinfoobject containing the full-lenght sequence of the GenBank record that the feature is part of as anXStringSetobject, and sequence metadata as agbHeaderobject..idIdentifier (index) of the feature in the GenBank record the feature is part of.
keyThe feature key.
locationA
gbLocationobject.qualifiersA named character vector. Name attributes correspond to GenBank qualifier tags.
Accessor functions
getHeader, getSequence,
ranges, key, index,
qualif
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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