Description Arguments Methods Methods Fields Extends Examples
Generator object for the "gbHeader"
reference class
Generates an object representing a GenBank/GenPept-format file header.
... |
List of arguments; must be named arguments
corresponding to the fields of a |
to_string(write_to_file = FALSE)
Generate a character string representation of a GenBank file header
write(file = "", append = FALSE, sep = "\n")
Write a GenBank file header to file.
#new(...)
:Create a new gbHeader
object.
#to_string(write_to_file = FALSE)
:Generate a character string representation of a GenBank file header.
#write(file = "", append = FALSE, sep = "\n"
:Write a GenBank header to file.
locus
: A "gbLocus"
object.
definition
:character
; Description of the sequence.
accession
:character
; The primary accession number.
A unique, unchanging identifier assigned to each GenBank sequence record.
version
:character
; The primary accession number and a
numeric version number
seqid
:character
; Gene Identifier ("GI"); An integer key
assigned to the sequence by NCBI.
dblink
:character
; Cross-references to resources that
support the existence a sequence record, such as the Project Database
and the NCBI Trace Assembly Archive.
dbsource
:character
; GenPept files only
keywords
:codecharacter; Short description of gene products and other information about an entry.
source
:character
; Common name of the organism.
organism
:character
; Formal scientific name of the
organism.
taxonomy
:character
; Taxonomic classification levels.
references
: Citations for all articles containing data
reported in the entry.A gbReferenceList
object.
comment
:character
; Remarks.
All reference classes extend and inherit methods from
"envRefClass"
.
1 | showClass("gbHeader")
|
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