README.md

In gtsitsiridis/MetaMap: Visualization tool for the metatranscriptome project

Getting started

You can start by running the following.

shiny::runApp('R')

If you are using a custom directory, instead of "R", make sure to include the following files and directories: R/global.R R/ui.R R/server.R R/methods.R R/plots.R R/www

Package

This app can also be built as a package.

Call MetaMap::launch().

Bookmarks

To save bookmarks, click on the bookmark button in the top right.

You can either copy the full URL or create a prettier URL mapping:

For the latter, create inst/data/bookmarks.json containing {"Study1": "af689dc..."} with names of your choice and IDs taken from _state_id=af689dc... in the URL the button gave you.

Now you can link to http://your.metamap.instance/?example=Study1

Note

The krona plot will not work on windows.

gtsitsiridis/MetaMap documentation built on May 16, 2019, 7:12 p.m.