makeSankey_links: Make Sankey links table
In gtsitsiridis/MetaMap: Visualization tool for the metatranscriptome project
Description
Usage
Arguments
Value
Description
Creates a table with information about all the links from source to target.
This table can be used to create a shankey plot.
Usage
1
2
makeSankey_links(tax_table, otu_table, source, target, source_filter,
level_filter)
Arguments
tax_table
filtered tax table from a phyloseq object
otu_table
otu_table from a phyloseq object
source
c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species")
target
c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species")
source_filter
String to filter source values.
level_filter
c("Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species")
Value
A data.frame with info about the links.
gtsitsiridis/MetaMap documentation built on May 16, 2019, 7:12 p.m.
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Description Usage Arguments Value
Description
Creates a table with information about all the links from source to target.
This table can be used to create a shankey plot.
Usage
1 2 | makeSankey_links(tax_table, otu_table, source, target, source_filter,
level_filter)
|
Arguments
tax_table |
filtered tax table from a phyloseq object |
otu_table |
otu_table from a phyloseq object |
source |
|
target |
|
source_filter |
String to filter |
level_filter |
|
Value
A data.frame with info about the links.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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