| arab | The Arabidopsis RNA-Seq Dataset |
| chisq_gof | Based on p-values obtained, perform chi-square-like tests for... |
| diagdata | Prepare Quantities for Diagnostic Plots (Histogram and... |
| diagPlot | Diagnostic Plots for Graphical Checks of Negative Binomial... |
| earthquake | The Earthquake Dataset |
| eppdata | Prepare Quantities for Empirical Probability Plots Using... |
| EPPlot | Empirical Probability Plots of Negative Binomial Regression... |
| fit.nb.reg.1 | Implement genewise dispersion approach (report dispersion and... |
| genewise | Implement genewise dispersion approach (but without any... |
| irls.nb | Estiamte the regression coefficients in an NB GLM model |
| irls.nb.1 | Estimate the regression coefficients in an NB GLM model |
| irls.nbp.1 | Estiamte the regression coefficients in an NBP GLM model |
| mddata | Prepare Quantities for Mean-Dispersion Plots Using ggplot2 |
| MDPlot | Mean-Dispersion Plots with Curves of Fitted Negative Binomial... |
| model.edgeR.common | Modeling NB2 Common Dispersion with the Adjusted Profile... |
| model.edgeR.genewise | Modeling NB Genewise Dispersion with the Adjusted Profile... |
| model.edgeR.tagcom | Modeling NB Tagwise-Common Dispersion with the Adjusted... |
| model.edgeR.tagtrd | Modeling NB Tagwise-Trended Dispersion with the Adjusted... |
| model.edgeR.trended | Modeling NB Trended (Non-parametric) Dispersion with the... |
| model.genewise | Modeling NB Genewise Dispersion Using NBPSeq |
| model.nb2.v | Modeling NB2 Regression Model with Maximum Likelihood (ML) on... |
| model.nbp.m | Modeling NBP Genewise Dispersion with the Maximum Ajdusted... |
| model.nbp.v | Modeling NBP Regression Model with Maximum Likelihood (ML) or... |
| model.nbq.m | Modeling NBQ Genewise Dispersion with the Maximum Ajdusted... |
| model.nbs.m | Modeling NBS Genewise Dispersion with the Maximum Ajdusted... |
| model.nbstep.m | Modeling NBSTEP Genewise Dispersion with the Maximum Ajdusted... |
| model.poi.v | Modeling Poisson Regression Model on Original and Simulated... |
| multiplot | Multiple plot function |
| nb.gof.m | Main Function of Implementing Simulation-based... |
| NBGOF-package | Goodness-of-Fit Tests and Model Diagnostics for Negative... |
| nb.gof.v | Main Function of Implementing Simulation-based... |
| sort.vec | Group-wise sort of residual matrix in multivariate case |
| summary.gofm | Report Summaries of the GOF Test Results for NB Dispersion... |
