Description Usage Arguments Details Value Author(s) References
This function is designed to fit a Poisson regression model. The output of this function will be passed to the main GOF function.
1 | model.poi.v(y, x, lib.sizes=NULL)
|
y |
an n-by-1 vector of non-negative integers. For a typical RNA-Seq experiment, this may represent the read counts for a single gene across n samples. |
x |
an n-by-p design matrix. For Poisson model fitting, we used the glm function, so if an intercept is desired, there is no need to include the first column of 1. |
lib.sizes |
library sizes of a RNA-Seq experiment. Default is 0 for all samples. |
The glm
function with family=poisson
is used for Poisson model fitting.
A list of quantities to be used in the main nb.gof.v
function.
Gu Mi <neo.migu@gmail.com>, Yanming Di, Daniel Schafer
See https://github.com/gu-mi/NBGOF/wiki/ for more details.
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