Man pages for guokai8/seq2Fun
Annotate sequences with KEGG pathways
| blast_help | Print the help function |
| dot-find.tools | find excute blast or diamond |
| dot-get.spe.code | find the species code for kegg |
| dot-makeblastdb | makeblastdb command |
| dot-makediamonddb | diamond makedb command |
| dot-vsplit | split vector into chunk with provide length |
| get.kegg.code | Extract kegg code |
| get.kegg.entry | collect all the pathway name of species from KEGG |
| keggGetm | Function modified from KEGGREST |
| korg | korg |
| listspecies | list organism names |
| makeblastdb | make blast database |
| preparedb | Prepare pathway sequences database from KEGG |
| runblast | run blast analysis |
| rundiamond | run dimond blast analysis |
| seq2fun | Blast search against kegg database |
