makecMSYdat: makecMSYdat generates a cMSY dataset out of other data files

In haddonm/datalowSA: A Package to Faciliate Application of Data poor Stock Assessments

makecMSYdat generates a cMSY dataset out of other data files

Description

makecMSYdat expects to find in the input data.frame or matrix, columns containing 'Year', and 'Total' (meaning total removals = catch + discards), and 'Resilience' being any of 'verylow', 'low', 'medium', or 'high'.

Usage

makecMSYdat(
  indat,
  spsname = "",
  yearcol = "Year",
  catchcol = "Catch",
  resil = "low"
)

Arguments

indat	the tier 4 datafile for one species
spsname	the name of the species to be analysed
yearcol	the column name of the year data
catchcol	the column namae of the total catch data
resil	the value of resilience for the species as a character of either "verylow", "low", "medium", or "high". Note the lower case, defaults to "low"

Value

a list containing a matrix of year and catch, and a list of the resilience and spsname

Examples

## Not run: 
print("read the csv file containing the general data into 'dat'")
print("then run  makecMSYdat(dat,'spsname')")

## End(Not run)

haddonm/datalowSA documentation built on Nov. 5, 2023, 6:40 p.m.