Files in haddonm/datalowSA
A Package to Faciliate Application of Data poor Stock Assessments

.Rbuildignore
.gitignore
DESCRIPTION
Meta/vignette.rds
NAMESPACE
R/RcppExports.R R/asmreduct.r R/aspm.r R/cMSY_funs.R R/callCfuncs.r R/catchcurve.r R/datalowSA.r R/datalow_utils.r R/datalowcpp.r R/spm.r README.md
data/dataspm.rda
data/fishdat.rda
data/invert.rda
data/orhdat1.RData
data/plaice.rda
datalowSA.Rproj
inst/doc/Catch_Curves.R inst/doc/Catch_Curves.Rmd
inst/doc/Catch_Curves.html
inst/doc/aspm.R inst/doc/aspm.Rmd
inst/doc/aspm.html
inst/doc/catch-MSY.R inst/doc/catch-MSY.Rmd
inst/doc/catch-MSY.html
inst/doc/data.R inst/doc/data.Rmd
inst/doc/data.html
inst/doc/datalowSA.R inst/doc/datalowSA.Rmd
inst/doc/datalowSA.html
inst/doc/spm.R inst/doc/spm.Rmd
inst/doc/spm.html
man/ExB.Rd man/ExBC.Rd man/MaA.Rd man/SpB.Rd man/SpBC.Rd man/addnorm.Rd man/altnegLL.Rd man/asmreduction.Rd man/aspmLL.Rd man/aspmPENLL.Rd man/aspmSSQ.Rd man/aspmphaseplot.Rd man/bh.Rd man/bhC.Rd man/bootASPM.Rd man/bootspm.Rd man/cMSYphaseplot.Rd man/calcout.Rd man/calcrmse.Rd man/ccyear.Rd man/central.Rd man/checkdata.Rd man/checkspmdata.Rd man/classicCC.Rd man/compyear.Rd man/countgtzero.Rd man/dataTemplate.Rd man/datalowSA.Rd man/dataspm.Rd man/displayModel.Rd man/doDepletion.Rd man/doconstC.Rd man/doproject.Rd man/dynamics.Rd man/facttonum.Rd man/fillell2.Rd man/fishNAAC.Rd man/fishdat.Rd man/fitASPM.Rd man/fitSPM.Rd man/getB0.Rd man/getLNCI.Rd man/getProduction.Rd man/getProductionC.Rd man/getlag.Rd man/getmaxy.Rd man/getminy.Rd man/getprop.Rd man/getrmse.Rd man/getsingle.Rd man/gettraject.Rd man/getvector.Rd man/greplow.Rd man/halftable.Rd man/histyear.Rd man/invert.Rd man/iscol.Rd man/logist.Rd man/magnitude.Rd man/makebiomC.Rd man/makecMSYdat.Rd man/makedataset.Rd man/makedeplet.Rd man/makespmdata.Rd man/multLL.Rd man/multinomLL.Rd man/negLL.Rd man/orhdat1.Rd man/outoptim.Rd man/parsyn.Rd man/penalty0.Rd man/penalty1.Rd man/plaice.Rd man/plot.spmdat.Rd man/plot1.Rd man/plotASPM.Rd man/plotcMSY6.Rd man/plotceASPM.Rd man/plotconstC.Rd man/plotdepletion.Rd man/plotfish.Rd man/plotfishery.Rd man/plotlag.Rd man/plotout.Rd man/plotprep.Rd man/plotreduction.Rd man/plottrajectory.Rd man/popN.Rd man/prodASPM.Rd man/projstats.Rd man/pulloutStats.Rd man/quants.Rd man/readdata.Rd man/removeEmpty.Rd man/robustASPM.Rd man/robustSPM.Rd man/run_cMSY.Rd man/selectCC.Rd man/simpfox.Rd man/simpspm.Rd man/spm.Rd man/spmMult.Rd man/spmphaseplot.Rd man/sraMSY.Rd man/ssq.Rd man/summary.reduction.Rd man/summarycMSY.Rd man/summspm.Rd man/toXL.Rd man/trendMSY.Rd man/unfished.Rd man/vB.Rd man/which.closest.Rd
src/.gitignore
src/RcppExports.cpp
src/cppfunctions.cpp
src/datalowSA.dll
src/fishNAAC.cpp
vignettes/Catch_Curves.R vignettes/Catch_Curves.Rmd vignettes/Catch_Curves.md vignettes/aspm.R vignettes/aspm.Rmd vignettes/aspm.md vignettes/catch-MSY.R vignettes/catch-MSY.Rmd vignettes/catch-MSY.md vignettes/data.R vignettes/data.Rmd vignettes/data.md vignettes/datalowSA.R vignettes/datalowSA.Rmd
vignettes/datalowSA_files/figure-html/SAFSbyprod-1.png
vignettes/figure/addCI-1.png
vignettes/figure/controlharvest-1.png
vignettes/figure/controlharvest2-1.png
vignettes/figure/correlations-1.png
vignettes/figure/finalyear-1.png
vignettes/figure/fitclassicCC-1.png
vignettes/figure/fitclassicCC2-1.png
vignettes/figure/guessparam-1.png
vignettes/figure/highharvest-1.png
vignettes/figure/makeprojections-1.png
vignettes/figure/msycontour-1.png
vignettes/figure/partialphaseplot-1.png
vignettes/figure/partialphaseplot2-1.png
vignettes/figure/phaseplot-1.png
vignettes/figure/plaicedata-1.png
vignettes/figure/plot2pars-1.png
vignettes/figure/plotcMSY-1.png
vignettes/figure/plotthefishery-1.png
vignettes/figure/plottimeseries-1.png
vignettes/figure/plottraj-1.png
vignettes/figure/plottrend, echo-TRUE-1.png
vignettes/figure/production_curve-1.png
vignettes/figure/selectCC-1.png
vignettes/figure/threepars-1.png
vignettes/figure/trendmsy-1.png
vignettes/figure/unnamed-chunk-4-1.png
vignettes/figure/unnamed-chunk-5-1.png
vignettes/spm.Rmd
haddonm/datalowSA documentation built on Aug. 21, 2019, 1:39 p.m.