ecoli.proteome: An object of 'Proteome-class' representing the _Escherichia...
In haibol2016/dagLogo: dagLogo: a bioconductor package for visualizeing conserved amino acid sequence pattern in groups based on probability theory
Description
Usage
Format
Details
Source
Examples
Description
A dataset containing the E. coli proteome.
Usage
1
Format
An object of Proteome-class for Escherichia coli proteome.
The format is: A list with one data frame and an character.
*‘proteome': ’data.frame': 13780 obs. of 4 variables
*‘type': ’character': "UniProt"
*‘species': ’character': "Escherichia coli"
The format of proteome is
*'ENTREZ_GENE': a character vector, records entrez gene id
*'SEQUENCE': a character vector, peptide sequences
*'ID': a character vector, Uniprot ID
*'LEN': a character vector, length of peptides
Details
used as an example dataset
Annotation data obtained by:
library(UniProt.ws)
taxId(UniProt.ws) <- 562
proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")
Source
Examples
1
2
3
data(ecoli.proteome)
head(ecoli.proteome@proteome)
ecoli.proteome@type
haibol2016/dagLogo documentation built on June 28, 2020, 1:31 a.m.
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Description Usage Format Details Source Examples
Description
A dataset containing the E. coli proteome.
Usage
1 |
Format
An object of Proteome-class for Escherichia coli proteome.
The format is: A list with one data frame and an character.
*‘proteome': ’data.frame': 13780 obs. of 4 variables *‘type': ’character': "UniProt" *‘species': ’character': "Escherichia coli"
The format of proteome is *'ENTREZ_GENE': a character vector, records entrez gene id *'SEQUENCE': a character vector, peptide sequences *'ID': a character vector, Uniprot ID *'LEN': a character vector, length of peptides
Details
used as an example dataset
Annotation data obtained by:
library(UniProt.ws)
taxId(UniProt.ws) <- 562
proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")
Source
Examples
1 2 3 | data(ecoli.proteome)
head(ecoli.proteome@proteome)
ecoli.proteome@type
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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