Description Usage Arguments Value Author(s) See Also Examples
View source: R/prepareProteome.R
prepare proteome from UniProt webserver or a fasta file
1 | prepareProteome(source, fasta, species = "unknown", ...)
|
source |
An object of |
fasta |
fasta file name or an object of AAStringSet |
species |
an character to assign the species of the proteome |
... |
parameters could be passed to prepareProteomeByFTP. |
an object of Proteome which contain protein sequence information.
Jianhong Ou
formatSequence
, buildBackgroundModel
1 2 3 4 5 6 | if(interactive()){
library(UniProt.ws)
availableUniprotSpecies("Drosophila melanogaster")
UniProt.ws <- UniProt.ws(taxId=7227)
proteome <- prepareProteome(UniProt.ws, species="Drosophila melanogaster")
}
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